Work
Work
The motto of this page shall be: publish or kehrwisch :-)
2010
| Markus Göker, Guido W. Grimm, Alexander F. Auch, Ralf Aurahs, Michal Kucera. A clustering optimization strategy for molecular taxonomy applied to planktonic foraminifera SSU rDNA. Evolutionary Bioinformatics Online, in press. | |
| Alexander F. Auch. Computational phylogenetics: Methods for analysing genome-scale data, Südwestdeutscher Verlag für Hochschulschriften, Saarbrücken, Germany. 2010. |
|
| Alexander F. Auch, Hans-Peter Klenk, Markus Göker. Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs. Standards in Genomic Sciences, 2(1):142-148. 2010. PDF |
|
| Alexander F. Auch, Mathias von Jan, Hans-Peter Klenk, Markus Göker. Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison. Standards in Genomic Sciences, 2(1):117-134. 2010. PDF | |
| Alexander F. Auch. A phylogenetic potpourri - Computational methods for analysing genome-scale data, Dissertation. URN: urn:nbn:de:bsz:21-opus-44779. Januar 2010. |
|
2009
| Heinz Stockinger, Alexander F. Auch, Markus Göker, Jan Meier-Kolthoff, Alexandros Stamatakis. Large-Scale Co-Phylogenetic Analysis on the Grid. International Journal of Grid and High Performance Computing, 1(1):39-54. 2009. |
|
| Daniel H. Huson, Daniel C. Richter, Suparna Mitra, Alexander F. Auch, Stephan C. Schuster. Methods for Comparative Metagenomics, APBC 2009, BMC Bioinformatics, 10(Suppl 1):S12, 2009. PDF |
2008
| Daniel C. Richter, Felix Ott, Alexander F. Auch, Ramona Schmid, Daniel H. Huson. MetaSim - A Sequencing Simulator for Genomics and Metagenomics. PLoS ONE 3(10): e3373 doi:10.1371/journal.pone.0003373, 2008. | |
| Daniel C. Richter, Felix Ott, Alexander F. Auch, Daniel H. Huson. MetaSim - a simulator for Genomics and Metagenomics. Poster at DECHEMA Status Seminar 'Microbial Genome Research in the Age of Ultrafast Sequencing Technologies', 2008. |
2007
| Alexandros Stamatakis, Alexander F. Auch, Jan P. Meier-Kolthoff, Markus Göker. AxPcoords & parallel AxParafit: statistical co-phylogenetic analyses on thousands of taxa. BMC Bioinformatics 8:405, 2007. PDF | |
| Alexander F. Auch. Phylogenetic inference via multiple sequence analysis and beyond. Talk at StEve Meeting 2007. A link to the slides will be provided soon |
|
| Daniel H. Huson, Alexander F. Auch, Ji Qi, Daniel Richter, Stephan C. Schuster. MEGAN - A Metagenome Analysis Tool. ISMB/ECCB 2007. Poster |
|
| Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster. Metagenome analysis using MEGAN. In Proceedings of the 5th Asia-Pacific Bioinformatics Conference, Volume 5 of Series on Advances in Bioinformatics and Computational Biology. Edited by D. Sankoff, L. Wang and F. Chin, Imperial College Press 2007:7-16. | |
| Jan P. Meier-Kolthoff, Alexander F. Auch, Daniel H. Huson, Markus Göker. COPYCAT: Co-phylogenetic Analysis tool. Bioinformatics 23(7):898-900, 2007. PDF |
|
| Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster. MEGAN Analysis of Metagenomic Data. Genome Research 17:377-386, 2007. PDF |
2006
| Alexander F. Auch, Stefan. R. Henz, Markus Göker. Phylogenies from whole Genomes - Methodological update within a distance-based framework. GCB 2006. Poster. This document is also published via TOBIAS-lib and can be cited. URN: urn:nbn:de:bsz:21-opus-34178 |
|
| Daniel H. Huson, Alexander F. Auch, Ji Qi, Stephan C. Schuster. MEGAN - A Metagenome Analysis Tool. GCB 2006. Poster |
|
| Alexander F. Auch, Stefan R. Henz, Barbara R. Holland, Markus Göker. Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences. BMC Bioinformatics 7:350, 2006. PDF |
|
| Hendrik N. Poinar, Carsten Schwarz, Ji Qi, Beth Shapiro, Ross D. E. MacPhee, Bernard Buigues, Alexei Tikhonov, Daniel Huson, Lynn P. Tomsho, Alexander Auch, Markus Rampp, Webb Miller, Stephan C. Schuster. Metagenomics to Paleogenomics: Large-Scale Sequencing of Mammoth DNA. Science 311:392-394, 2006 |
2005
| Stefan R. Henz, Daniel H. Huson, Alexander F. Auch, Kay Nieselt-Struwe, Stephan C. Schuster. Whole-genome prokaryotic phylogeny. Bioinformatics 21(10):2329-2335, 2005. Abstract |
2004
| Stefan R. Henz, Daniel H. Huson, Alexander F. Auch, Vincent Moulton, Stephan C. Schuster. A consensus network of prokaryotic gene trees. In A. Gramada and P.E. Bourne, editors, Proc. of RECOMB "Currents in Computational Molecular Biology 2004". Poster |
2003
|
Novell Anwender-Workshop 2003, Uni Leipzig Präsentation, PDF |
|
| Stefan R. Henz, Alexander F. Auch, Daniel H. Huson, Kay Nieselt-Struwe, Stephan C. Schuster. Whole Genome-based Prokaryotic Phylogeny. ECCB 2003, short paper |
|
